PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008173
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 593aa    MW: 64022.9 Da    PI: 7.4428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008173genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30343401259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg Hnh+
  DCAR_008173 343 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRTILITTYEGAHNHP 401
                  7****************************9****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-33327403IPR003657WRKY domain
SuperFamilySSF1182902.09E-27335403IPR003657WRKY domain
PROSITE profilePS5081129.448337403IPR003657WRKY domain
SMARTSM007745.8E-36342402IPR003657WRKY domain
PfamPF031062.7E-26344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVNISTTKAS NSLTLNLSTS CFLVYFSSVS FSSRGTRRTR RDGATETLIF SSLVGPHSSH  60
LSPPLTHHLT DSAGSSPSGN NPRVVIGELD LFSSKKTNDN YDHSVHYPVM DSSIDVAMKH  120
EKSRSEAQLD VNTRLHLLTA NPGSDQSMVD DGVSSSLVDE EAKNKLLRIQ SELERMNTEN  180
ERLRGMVSHV TNNYAALQMH IVTVMQQQNA RAETTPEQQI GEEKTQDRND GSGDHQGHIV  240
PRQFLDLGPS RGDNQSHSSS EQRTQSGSDI NNVELNNGNR IHAAGKRIDR EDSPHPESWN  300
SNKAPKIIAS SNSTSNAVDQ VTEATMRKAR VSVRARSDAP MITDGCQWRK YGQKMAKGNP  360
CPRAYYRCTM AGGCPVRKQV QRCAEDRTIL ITTYEGAHNH PLPPAAMAMA STTSAAANML  420
LSGSMSSGEG IMNPNLLARA ILPMSSSSMA TISASAPFPT VTLDLTQSPN PLQYQRPSSQ  480
FQGPFQAAPP QQNFVGLSPS PQVFGHPVYN QSKFSGLHVS SQDMAGSNHL QAQAQAHHPP  540
PQFHQSQPQT SFEDTLSAAT AAITTDPNFT AALAAAISSM MGGSTGHHNN SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21329405176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9C5191e-142WRKY6_ARATH; WRKY transcription factor 6
TrEMBLD0PSE90.0D0PSE9_9LAMI; WRKY transcription factor
STRINGVIT_10s0116g01200.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-113WRKY family protein